Data Migration with Spark to Hive

In this presentation, Vineet will be explaining case study of one of my customers using Spark to migrate terabytes of data from GPFS into Hive tables. The ETL pipeline was built purely using Spark. The pipeline extracted target (Hive) table properties such as – identification of Hive Date/Timestamp columns, whether target table is partitioned or non-partitioned, target storage formats (Parquet or Avro) and source to target columns mappings. These target tables contain few to hundreds of columns and non standard date fomats into Hive standard timestamp format.
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1.Data Migration with Spark Vineet Kumar #UnifiedAnalytics #SparkAISummit

2.Why Data Migration? • Business requirement - Migrate Historical data into data lake for analysis - This may require some light transformation. • Data Science - This data can provide better business insight. More data -> better models -> better predictions • Enterprise Data Lake - There may be thousands of datafiles sitting in multiple source systems. • EDW - Data from EDW for archival purpose into the lake. • Standards - Store data in with some standards- For example: partition strategy, storage formats- Parquet, Avro etc.

3.1000s of files - Text Files - XML - JSON Data Lake RDMBS - EDW - Data Archive #UnifiedAnalytics #SparkAISummit 3

4.Migration Issues • Schema for text files - header missing or first line as a header. • Data in files is neither consistent an nor in target standard format. – Example – timestamp, Hive standard format is yyyy-MM-dd hh24:mi:ss • Over the time file structure(s) might have changed: some new columns added or removed. • There could be thousands of files with different structure- Separate ETL mapping/code for each file ??? • Target table can be partitioned or non-partitioned. • Source data size can from few megabytes to terabytes, or from a few columns to thousands of columns. • Partitioned column can be one of the existing columns or custom column based on the value passed as an argument. – partitionBy=partitionField, partitionValue=<<Value>> – Example : partitionBy=‘ingestion_date’ partitionValue=‘20190401’

5. Data Migration Approach val sparksession = SparkSession Create Spark/Hive context .builder() .enableHiveSupport() .getOrCreate() Text Files (mydata.csv) val df = sparksession.read.format("com.databricks.spark.csv") .option("delimiter",”,") .load(“mydata.csv”) Hive Write XML Files val df = sparksession.read.format("com.databricks.spark.xml") .load(“mydata.xml”) <<transformation logic >> df.write.mode(“APPEND”). JDBC call insertInto(HivetableName) RDBMS

6.Wait… Schema ? #UnifiedAnalytics #SparkAISummit 6

7.XML, JSON or RDBMS sources • Schema present in the source. • Spark can automatically infer schema from the source. scala> df.columns res02: Array[String] = Array(id, name, address) Text Files – how to get schema? • File header is not present in file. • Can Infer schema, but what about column names? • Data from last couple of years and the file format has been evolved. scala> df.columns res01: Array[String] = Array(_c0, _c1, _c2)

8.Schema for Text files • Option 1 : File header exists in first line • Option 2: File header from external file – JSON • Option 3: Create empty table corresponds to csv file structure • Option 4: define schema - StructType or Case Class

9. Schema for CSV files : Option 3 • Create empty table corresponds to text file structure – Example – Text file : file1.csv 1|John|100 street1,NY|10/20/1974 – Create Hive structure corresponds to the file : file1_structure create table file1_raw(id:string, name:string, address:string, dob:timestamp) – Map Dataframe columns with the structure from previous step val hiveSchema = sparksession.sql("select * from file1_raw where 1=0") val dfColumns = hiveSchema.schema.fieldNames.toList // You should check if column count is same before mapping it val textFileWithSchemaDF = df.toDF(dfColumns: _*)

10.Before - Column Names : scala> df.show() +---+-----+--------------+----------+ |_c0| _c1| _c2| _c3| +---+-----+--------------+----------+ | 1| John|100 street1,NY|10/20/1975| | 2|Chris|Main Street,KY|10/20/1975| | 3|Marry|park Avenue,TN|10/20/1975| +---+-----+--------------+----------+ After : scala> df2.show() +---+-----+--------------+----------+ |id| name| address| dob| +---+-----+--------------+----------+ | 1| John|100 street1,NY|10/20/1975| | 2|Chris|Main Street,KY|10/20/1975| | 3|Marry|park Avenue,TN|10/20/1975| +---+-----+--------------+----------+

11.Dates/timestamp ? • Historical files - Date format can change over time. Files from year 2004: 1|John|100 street1,NY|10/20/1974 Date format changed 2|Chris|Main Street,KY|10/01/1975 3|Marry|park Avenue,TN|11/10/1972 … … Files from year 2018 onwards: 1|John|100 street1,NY|1975-10-02 2|Chris|Main Street,KY|2010-11-20|Louisville New columns added 3|Marry|park Avenue,TN|2018-04-01 10:20:01.001 Files have different formats: File1- dd/mm/yyyy File2 – mm/dd/yyyy File3 – yyyy/mm/dd:hh24:mi:ss Same file but different date format ….

12.Timestamp columns • Target Hive Table: id: int, name string, Timestamp Column – Can be at any dob timestamp, location in target table. Find these first address string, move_in_date timestamp, rent_due_date timestamp PARTITION COLUMNS… for (i <- 0 to (hiveSchemaArray.length - 1)) { hiveschemaArray.toString.contains("Timestamp") }

13.Transformation for Timestamp data • Hive timestamp format - yyyy-MM-dd HH:mm:ss • Create UDF to return valid date format. Input can be in any formats val getHiveDateFormatUDF=udf(getValidDateFormat) 10/12/2019 getHiveDateFormatUDF 2019-10-12 00:00:00

14.UDF Logic for Date transformation import java.time.LocalDateTime import java.time.format.{DateTimeFormatter, DateTimeParseException) val inputFormats=Array(“MM/dd/yyyy”, ”yyyyMMdd”, …….) This can build from a file as an argument val validHiveFormat= DateTimeFormatter.ofPattern(“yyyy-MM-dd HH:mm:ss”) val inputDate=“10/12/2019” Parameter to a function for (format <- inputFormats) { try { val dateFormat = DateTimeFormatter.ofPattern(format) val newDate= LocalDateTime.parse(inputDate, dateFormat) newDate.format(validHiveFormat) } catch e : DateTimeParseException =>null }

15.Date transformation – Hive format • Find columns with timestamp data type and apply udf on those columns for (i <- 0 to (hiveSchemaArray.length - 1)) { if (hiveschemaArray(i).toString.contains("Timestamp")) { val field=schemaArray(i).toString.replace("StructField(","").split(",")(0) val tempfield = field + "_tmp" val tempdf = df.withColumn(tempfield,getHiveDateFormatUDF(col(field))) .drop(field).withColumnRenamed(tempfied, field) val newdf = tempdf }

16.Before applying UDF : scala> df2.show() +---+-----+--------------+----------+ |id| name| address| dob| +---+-----+--------------+----------+ | 1| John|100 street1,NY|10/20/1975| | 2|Chris|Main Street,KY|10/20/1975| | 3|Marry|park Avenue,TN|10/20/1975| +---+-----+--------------+----------+ After applying date UDF : scala> newDF.show() +---+-----+--------------+----------+ |id| name| address| dob| +---+-----+--------------+----------+ | 1| John|100 street1,NY|1975-10-20 00:00:00| | 2|Chris|Main Street,KY|1975-10-20 00:00:00| | 3|Marry|park Avenue,TN|1975-10-20 00:00:00| +---+-----+--------------+----------+

17.Column/Data Element Position File format Hive structure Id :int Id :int Name: string Address: string Address: string Name: string Dob: string Dob: timestamp • Spark Dataframe(df) format from text file: name at position 2, address at position 3 id| name| address| dob -------------------------------- 1|John|100 street1,NY|10/20/1974 df.write.mode(“APPEND”).insertInto(HivetableName) Or val query = ”INSERT OVERWRITE INTO hivetable SELECT * FROM textFileDF“ Sparksession.sql(query) • Hive table format : address at position 2 • name switched to address, and address to name id| address| name| dob ---------------------------------------------------------- 1,John, 100 stree1 NY, Null

18.Column/Data Element Position • Relational world INSERT INTO hivetable(id,name,address) SELECT id,name,address from <<textFiledataFrame>> • Read target hive table structure and column position. //Get the Hive columns with position from target table val hiveTableColumns= sparksession.sql("select * from hivetable where 1=0").columns val columns = hiveTableColumns.map(x=> col(x)) // select columns source data frame and insert into target table. dfnew.select(columns:_*).write.mode(“APPEND”).insertInto(tableName)

19.Partitioned Table. • Target Hive tables can be partitioned or non-partitioned. newDF.select(columns:_*).write.mode(“APPEND”).insertInto(tableName) • Partitioned by daily, monthly or hourly. • Partitioned with different columns. Example: Hivetable1 – Frequency daily – partition column – load_date Hivetable2 – Frequency monthly – partition column – load_month • Add partitioned column as last column before inserting into hive newDF2 = newDF.withColumn(“load_date", lit(current_timestamp()))

20.Partitioned Table. • Partition column is one of the existing field from the file. val hiveTableColumns= sparksession.sql("select * from hivetable where1=0").columns val columns = hiveTableColumns.map(x=> col(x)) newDF.select(columns:_*).write.mode(“APPEND”).insertInto(tableName) • Partition is based on custom field and value passed as an argument from the command line. spark2-submit arguments : partionBy=“field1”, partitionValue=“1100” • Add Partition column as a last column in Dataframe newDF2 = newDF.withColumn(partitionBy.trim().toLowerCase(), lit(partitionValue)) • Final step: before inserting into hive table newDF2.select(columns:_*).write.mode(“APPEND”).insertInto(tableName)

21.Performance: Cluster Resources • Migration runs in it’s own Yarn Pool • Large (Files Size >10GB, or with 1000+ Columns) # repartition size = min(fileSize(MB)/256,50) # executors # Executor-cores # executor-size • Medium(File Size : 1 – 10GB, or with < 1000 Columns) # repartition size = min(fileSize(MB)/256,20) # executors # executor-cores # executor-size • Small # executors # Executor-cores # executor-size

22.Data Pipeline Dataframe Apply schema on Dataframe from Hive table corresponds to text file Read datafile Perform transformation- timestamp conversion etc Parquet table Add partitioned column to Dataframe Write to Hive table #UnifiedAnalytics #SparkAISummit 22

23.DON’T FORGET TO RATE AND REVIEW THE SESSIONS SEARCH SPARK + AI SUMMIT